Handbook of biosensors and biochips. Vol. 1

VOLUME 1 Preface List of Contributors List of Abbreviations and Acronyms Part One lntreduction to Biosensor and Bioohip Technologies Christopher R. Lowe 1 Overview of Biosensor and Bioarray Technologies Christopher R. Lowe 2 Overview of Modern Analytical Needs Frank Davis, Stuart D. Collyer and Skamus P. J. Higson 3 Historical Perspective of Biosensor and Biochip Development Jeffrey D. Newman and Anthony P. F. Turner Part Two Biological and M~lwg-ulaRc eqpit5sn Systems Robert S. Marks 4 Protein Recognition in Biology Paula McCourt, Joseph Nickels, Tetsziya Zshino and Irwin Chaiken 5 Enzymology Tony Cuss 6 Molecular Antibody Technologies for Biosensors and Bioanalytics Karl Kramer, Georg Mahlknecht and Bertold Hock 7 Phage-Displayed Epitopes as Bioreceptors for Biosensors xi 115 ... Danit Atias, Leslie Lobel, Marko Virtu m and Robert S. Marks xxi 8 Luciferase Reporter Bacteriophages 133 Steven Hagens and Martin J. Loessner 9 Nahzral Luminescent Whole-Cell 3 Bioreporters 143 Shimon Ulitzur 10 Recombinant Bacterial Reporter 7 Systems 153 Shimshon Belkin 11 Recombinant Whole-Cell Bioreporter 23 Systems Based on Beetle Luciferases 163 Angela Zvask, Anne Kahru and Mark0 Virtu 12 Recombinant Aequorin-Based Systems 41 for Biomrker Analysis 173 Laura Rowe, Krystal Teasley, Emre Dikici, Xiaoge Qu, Mark Ensor, Sapna Deo and Sylvia Daunert 13 Yeast-Based Biosensors and Their Incorporation of Mammalian Protein Receptors for High-Throughput Screening 187 John B. C. Findlay, Lisa Tang and Graham Myteside 14 Molecularly Imprinted Po1ymers as Recognition Elements in Sensors 199 Karsten Haupt and Anne-Sophie Belmont 15 Aptameric Biosensors 217 Anat Meir, Robert S. Marks and Milan N. Stojanovic CONTENTS Part three The Biolagpl-Materials Interface: Interfacial Science and Receptor Integration 235 David C. Cullen 16 Immobilization of Biomolecules by Electropolymerized Films 237 Serge Cosnier 17 Electrochemical Polymerization for Preparation of Electrochemical Sensors 251 Howard H. Weetall 18 Smart Hydrogel Materials 259 Elizabeth A. Moschou, Leonidas G. Bachas and Sylvia Daunen 19 Scanning Electrochemical Microscopy for Biomolecular Immobilization and JJWdng 269 Sabine Szunerits 20 Modeling of Biosensor Interfaces 291 Michael E. G. Lyons 21 Ion Channel Biosensors Bruce A. Come11 25 Overview of Optical Biosensing Techniques 413 Zbrahim Abdulhalim, Mohammad Zourob and Akhlesh Lakhtakia 26 Localized Surface Plasmon Resonance (LSPR) Spectroscopy in Biosensing 447 Alexander Vaskevich and Israel Rubinstein 27 Picoscopes, New Label-Free Biosensors Petr I. Nikitin 28 Cherniluminescent Optical Fiber Immunosensor 485 Sebastien Hernnann and Robert S. Marks 29 Bioluminescent Whole-Cell Optical Fiber Sensors 495 Boris Polyak and Robert S. Marks 30 Phagocyte Luminescent Sensor 511 Moni Magrisso and Robert S. Marks Part Four Transducer Techna&i and Biloarray Technolq$es 337 Howard H. Weetall 22 Electrochemical Techniques in Biosensors 341 Sunil K. Arya, Surinder P. Singh and Bansi D. Malhotra 23 Conductometric Enzyme Biosensors 379 Sergei V. Dzyadevych, Valentyna N. Arkhypova, Alexey P. Soldatkin, Anna V. El'skaya, Claude Martelet and Nicole Jaflezic-Renault 24 Chemical and Biological Field-Effect Sensors for Liquids - A Status Report 395 Arshak Poghossian and Michael J. Schoning Applications of the Electrogenerated Luminescent Reactions in Biosensor and Biochip Developments 531 Christophe A. Marquette and Loi'c J. Blum Dual Polarization Interferometry: A Real-Time Optical Technique for Measuring (Bio)molecular Orientation, Structure and Function at the SolidILiquid Interface 549 Graham H. Cross, Neville J. Freeman and Marcus J. Swann Grating-Based Optical Biosensors 569 Katalin Erdblyi, Anthony G. Frutos, Jeremy J. Ramsden, Zstvdn ~zendrh and Guy Voirin Holographic Sensors Christopher R. Lowe Introduction to Acoustic Technologies 597 Bemardita Araya-Kleinsteuber and Christopher R. Lowe CONTENTS vii 36 Love Wave Biosensors 619 44 Microelectrocheal Systems 747 Kathryn A. Melzak and Electra Gizeli Stuart A. G. Evans and Lindy J. Murphy 37 Magnetic Acoustic Resonator Sensor (MARS) 627 45 Micro- and Nanoelectromechanical Bemardita Araya-Kleinsteuber, Sensors 757 Adrian C. Stevenson and Keith L. Aubin, Bojan Zlic and Christopher R. Lowe Harold G. Craighead 38 Thermal Biosensor and Microbiosensor 639 46 Nanobiolithography of Biochips Techniques 771 Levi A. Gheber Bin Xie and Bengt Danielsson 47 Nanosphere Lithography-Based 39 Microcalorimetry and Related 659 Chemical Nanopattem for Techniques Biosensor Design 785 Alan Cooper Pascal Colpo, Andrea Valsesia, 40 Magnetic Biosensor Techniques 671 Patricia Lisboa and Frangois Rossi Christopher H. Marrows Author Index Subject Index VOLUME 2 Preface List of Contributors Lit of Abbreviations and Acronyms Part Five Miniatwrlzed, Mieroenglnesrd, and Pa '"I- " ystems Dcrvrd C. Cullen 48 Quantum Dots: Their Use in I Biomedical Research and Clinical Diagnostics 793 V Stanley Abramowitz 49 Manipulation and Detection of Magnetic Nanoparticles for Diagnostic Applications xi 799 Benjamin B. Yellen and Randall M. Erb . . . XU1 50 The Detection and Characterization xxi of Ions, DNA, and Proteins Using Nanometer-Seale Pores 811 John J. Kasianowicz, Sarah E. Henrickson, Jeffery C. Lemn, 689 Martin Misakian, Rekha G. Panchal, Tam Nguyen, Rick Gussio, Introduction to Microfluidic Techniques Bernhard H. Weigl, Ron L. Bardell and Catherine Cabrera Practical Aspects of Microfluidic Devices: Moving Fluids and Building Devices Bemhard H. Weigl, Ron L. Bardell and Catherine Cabrera Polymer-Based Microsystem Techniques Matthias Schuenemnn and Erol C. Harvey Kelly M. Halverson, Sina Bavari, 691 Devanand K. Shenoy and Encent M. Stanford 51 Conducting Polymer Nanowire-Based Biosensors 831 Adam K. Wanekaya, Wilfred Chen, 711 Nosang V. Myung and Ashok Mulchandani 52 Biosensors Based on Single-Walled Carbon Nanotube Near-Infrared Fluorescence 843 Paul W. Barone, Esther S. Jeng, Daniel A. Heller and Michael S. Strano viii CONTENTS Part Six Array Technologies lsao Karube Nucleic Acid Arrays Hirotaka Miyachi Protein Chips and Detection Tools Kenji Yokoyama, Atsunori Hiratsuka, Hideki Kinoshita, Keisuke Usui and Yoshio Suzuki Surface-Enhanced Laser Desorptionl Ionization (SELDI) Technology Lee 0. Lomas and Scot R. Weinberger Fiber-optic Array Biosensors Rahela GaSparac and David R. Walt Surface Plasmon Resonance Array Devices Masayasu Suzuki, Yasunori Zribe and Tatsuya Tobita Label-Free Gene and Protein Sensors Based on Electrochemical and Local Plasmon Resonance Devices 925 Kagan Kennan, Tatsuro Endo and Eiichi Tamiya An Electrochemical Biochip Sensor for the Detection of Pollutants 939 Rachela Popovtzer, Yosi Shacham-Diamand and Judith Rishpon Microcantilever Array Devices 949 Daniel HaeJEiger and Anja Boisen Biosniffers (Gas-Phase Biosensors) as Artificial Olfaction 961 Kohji Mitsubayashi Part Seven Data Analysis, Conditioning, and Pmntatian l u J \ r .M- . l ~ ~ \,~,..~ !i,+ . ! 979 David C. Cullen 62 Design of Data Algorithms for Blood Glucose Biosensors 981 John J. Rippeth and Wah 0. Ho Microarray Analysis Software and its Applications 995 Conrad Bessant Data Validation and Interpretation 1007 Ursula E. Spichiger-Keller Introduction to Bayesian Methods for Biosensor Design 1019 Edmund S. Jackson and William J. Fitzgerald Part Eight Areas and Examples of Biosensor Applications Christopher R. Lowe Genetic and Other DNA-Based Biosensor Applications 1035 Wim Laureyn, Tim Stakenborg and Paul Jacobs Examples of Biosensors for the Measurement of Trace Medical Analytes 1055 Maria Minunni, Sara Tombelli, Sonia Centi and Marco Mascini Biosensors for Monitoring Metabolites in Clinical Medicine 1069 John C. Pickup Need for Biosensors in Infectious Disease Epidemiology 1077 Laurence Baril Biosensors for Neurological Disease 1085 Kathryn M. Bell and Steven E. Kornguth Utility of Biosensors in the Pharmaceutical Industry 1099 Trevor Chapman, Coulton Legge and Ash Pate1 Glucose Measurement Within Diabetes via "Traditional" Electrochemical Biosensors 1111 Elizabeth A. H. Hall CONTENTS 73 Field-Operable Biosensors for 'Ikopical 81 Life Detection within Planetary Dispatch 1131 Exploration: Context for Biosensor Rodica E. Zonescu, Victoria Yavelsky, and Related Bioanalytical Tamar Amir, Natalie Gavrielov and Technologies 1237 Leslie Lobel David C. Cullen and Mark R. Sims 74 Lateral-Flow Immunochromatographic Assays 1151 Part Nine ornrnerdalization, Business and R. J. Davies, S. S. Eapen and . .egulatory ISSUE S. J. Carlisle Christopher R. Lowe 75 Chip-Based Biosensors for Environmental Monitoring 1167 82 Biacore - Creating the Business of Kim R. Rogers Label-Free Protein-Interaction Analysis 1261 76 Environmental Biochemical Stefan Lifds Oxygen Demand and Related Measurement 1175 83 Commemialization of DNA Arrays - Yoko Nomura, Mifumi Shimomura-Shimizu Affymetrix a Case Study 1273 and Zsao Karube Stanley Abramowitz 77 Optical Biosensor for the Determination of Trace Pollutants in the Environment 1181 Giienter Gauglitz, Giienther Pro11 and Jens Tschmelak 78 Food and Beverage Applications of Biosensor Technologies 1191 Helge R. Schnerr 79 Agriculture, Horticulture, and Related Applications 1203 Leon A. Terry 80 From Earth to Space: Biosensing at the International Space Station 1213 Christa Baumstark-Khan and Christine E. Hellweg 84 RAPTOR: Development of a Fiber-optic Biosensor 1281 George P. Anderson and David A. McCrae 85 Regulatory and Validation Issues for Biosensors and Related Bioanalytical Technologies 1289 Nikolay V. Sergeev, Keith E. Herold and Avraham Rasooly Part Ten The Future Christopher R. Lowe Author Index Subject Index